mematt / ml4calibrated450kLinks
This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estimating class probabilities for personalized cancer diagnostics on DNA methylation microarray data"
☆23Updated 3 years ago
Alternatives and similar repositories for ml4calibrated450k
Users that are interested in ml4calibrated450k are comparing it to the libraries listed below
Sorting:
- ☆59Updated 3 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆54Updated 2 months ago
- TCGA-Assembler 2☆77Updated 7 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆106Updated 2 years ago
- ☆62Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- ☆60Updated 4 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- ☆40Updated 7 years ago
- Multiscale embedded gene co-expression network analysis☆56Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- ☆41Updated 7 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆26Updated 3 years ago
- ☆47Updated 3 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆30Updated 5 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 6 months ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- ☆42Updated last year
- published papers with a lot of data☆74Updated 6 months ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated 11 months ago