Alternatives and similar repositories for CancerVar

Users that are interested in CancerVar are comparing it to the libraries listed below

• broadinstitute / RNA_MUTECT_1.0-1
  ☆39Updated 5 years ago
• aeeckhou / shallowHRD
  This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …
  ☆34Updated 2 months ago
• XWangLabTHU / cfDNApipe
  cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
  ☆74Updated 3 years ago
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆63Updated 4 months ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆28Updated 2 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated 3 months ago
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆33Updated 5 years ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆53Updated 3 years ago
• broadinstitute / PhylogicNDT
  ☆81Updated 7 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆88Updated last month
• icbi-lab / nextNEOpi
  nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
  ☆81Updated 5 months ago
• bjtrost / TCAG-WGS-CNV-workflow
  Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods
  ☆46Updated 3 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated last month
• ding-lab / MuSiC2
  identifying mutational significance in cancer genomes
  ☆62Updated 3 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆31Updated last year
• OSU-SRLab / MANTIS
  Microsatellite Analysis for Normal-Tumor InStability
  ☆75Updated 3 years ago
• parklab / ShatterSeek
  ☆72Updated 2 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆98Updated 4 years ago
• OpenGene / ctdna-pipeline
  A simplified pipeline for ctDNA sequencing data analysis
  ☆37Updated 8 years ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆72Updated last year
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆75Updated last year
• broadinstitute / oncotator
  ☆69Updated 3 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• ding-lab / PanCanAtlasGermline
  ☆44Updated 7 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• XWangLabTHU / DISMIR
  ☆25Updated 3 years ago
• parklab / SigMA
  Mutational signature analysis for low statistics SNV data
  ☆64Updated last year