Clinical interpretation of somatic mutations in cancer
☆53Feb 20, 2025Updated last year
Alternatives and similar repositories for CancerVar
Users that are interested in CancerVar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- Tumor Mutational Burden☆66Mar 17, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- ☆30Jul 10, 2019Updated 6 years ago
- ☆11Oct 19, 2021Updated 4 years ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- ☆37Mar 16, 2021Updated 5 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆208May 28, 2023Updated 3 years ago
- ☆11May 26, 2023Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆94May 15, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Oct 17, 2024Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- ☆20Jun 23, 2021Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- ☆26Dec 4, 2019Updated 6 years ago
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Jan 10, 2026Updated 4 months ago
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 4 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆41Apr 22, 2026Updated last month
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 2 years ago
- ☆13Jun 7, 2024Updated 2 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆205Apr 25, 2026Updated last month
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆69Jun 21, 2022Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆56Mar 27, 2026Updated 2 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 4 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago