maxplanck-ie / parkour
Moved to: https://github.com/maxplanck-ie/parkour2
☆33Updated 2 years ago
Alternatives and similar repositories for parkour:
Users that are interested in parkour are comparing it to the libraries listed below
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Web-based database system for flow cell management (incl. REST API)☆15Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆32Updated 5 months ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆51Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- See the main fork of this repository here >>>☆38Updated last month
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 4 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆11Updated 3 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- ☆13Updated 7 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 5 years ago