Alternatives and similar repositories for parkour:

Users that are interested in parkour are comparing it to the libraries listed below

• bihealth / digestiflow-server
  Web-based database system for flow cell management (incl. REST API)
  ☆15Updated last year
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆45Updated this week
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated last year
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 2 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 4 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆40Updated 7 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆43Updated 6 years ago
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 5 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 3 weeks ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆43Updated 5 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆39Updated last month
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• kevinblighe / ClinicalGradeDNAseq
  Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…
  ☆26Updated 5 years ago
• melbournebioinformatics / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…
  ☆34Updated 11 years ago
• matdoering / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆25Updated last week
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆24Updated last month
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆12Updated 4 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• CFSAN-Biostatistics / snp-pipeline
  SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…
  ☆58Updated last year
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated last year
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last month
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆52Updated 9 months ago