maxplanck-ie / parkourLinks
Moved to: https://github.com/maxplanck-ie/parkour2
☆34Updated 2 years ago
Alternatives and similar repositories for parkour
Users that are interested in parkour are comparing it to the libraries listed below
Sorting:
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Web-based database system for flow cell management (incl. REST API)☆15Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Ultra-efficient taxonomic mapping of NGS data☆52Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆16Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Validate FastQ Files☆36Updated 6 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- ☆13Updated 7 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated last month
- Bioinformatics curated workflows that use Biocontainers tools☆19Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Example project for integrating igv.js and flask☆26Updated 2 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 8 months ago
- full taxonomer cython repository☆22Updated 5 years ago
- List of IARC bioinformatics pipelines and resources☆51Updated 3 weeks ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago