maxplanck-ie / parkourLinks
Moved to: https://github.com/maxplanck-ie/parkour2
☆33Updated 3 years ago
Alternatives and similar repositories for parkour
Users that are interested in parkour are comparing it to the libraries listed below
Sorting:
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 6 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- A python package and a set of shell commands to handle GTF files☆50Updated this week
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Web-based database system for flow cell management (incl. REST API)☆16Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated 2 weeks ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated this week
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last month
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Updated 7 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated last month
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- ☆16Updated 9 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- CWL+Singularity implementation of an RNA editing workflow☆39Updated 5 years ago