Moved to: https://github.com/maxplanck-ie/parkour2
☆32Aug 24, 2022Updated 3 years ago
Alternatives and similar repositories for parkour
Users that are interested in parkour are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- **PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. The API backend for Leaf LIMS☆13Jun 10, 2021Updated 4 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆11Mar 5, 2025Updated last year
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and report…☆89Updated this week
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- A genomic LIMS and data repository.☆14Apr 10, 2023Updated 2 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Sep 28, 2018Updated 7 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 2 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Apr 19, 2020Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆35Mar 2, 2021Updated 5 years ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated last month
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ansible playbook for managing UseGalaxy.eu infrastructure.☆25Mar 23, 2026Updated last week
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆248Aug 10, 2025Updated 7 months ago
- FusionAnnotator source code☆16Feb 27, 2026Updated last month
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- ☆16Jan 6, 2025Updated last year
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago
- ☆15Jun 2, 2021Updated 4 years ago