shijianasdf / UsualRcode
bioinformatics R test code
☆13Updated 2 years ago
Alternatives and similar repositories for UsualRcode:
Users that are interested in UsualRcode are comparing it to the libraries listed below
- ☆16Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- single cell and bulk RNASeq analysis scripts☆12Updated 3 years ago
- ☆24Updated last year
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆13Updated 3 years ago
- ☆22Updated 4 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- ☆15Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆45Updated 6 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated 5 months ago
- ☆22Updated 2 years ago
- Readme☆10Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆11Updated 11 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆24Updated 2 years ago
- ☆20Updated last year
- ☆12Updated 5 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆13Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- HTCA Analysis Tools☆4Updated 2 years ago
- ☆17Updated 4 years ago