shijianasdf / UsualRcodeLinks
bioinformatics R test code
☆14Updated 3 months ago
Alternatives and similar repositories for UsualRcode
Users that are interested in UsualRcode are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- ☆26Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆14Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆12Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 6 years ago
- ☆13Updated 4 years ago
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Updated 5 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Updated 3 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- ☆16Updated 2 months ago
- ☆11Updated 7 months ago
- ☆17Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Updated 6 years ago
- ☆12Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Advanced steps of the OSCA book☆14Updated last month
- ☆23Updated last year
- ☆19Updated 5 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Updated 7 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Updated 5 years ago