ChenMengjie / VIPERLinks
☆19Updated 6 years ago
Alternatives and similar repositories for VIPER
Users that are interested in VIPER are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Updated 3 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆26Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- ☆62Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆29Updated 9 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Updated 9 months ago
- ☆62Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆40Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last week
- ☆16Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆50Updated 6 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆39Updated last year
- Python implementation of Gene Trajectory☆30Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago