ChenMengjie / VIPERLinks
☆19Updated 6 years ago
Alternatives and similar repositories for VIPER
Users that are interested in VIPER are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 9 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated 2 years ago
- ☆61Updated 4 months ago
- ☆50Updated 6 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Updated 3 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last month
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆62Updated 2 years ago
- ☆41Updated 4 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- Accurate and fast cell marker gene identification with COSG☆54Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- ☆13Updated 2 years ago
- SCDC☆45Updated 6 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago