XWangLabTHU / cfDNApipeLinks
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
☆67Updated 2 years ago
Alternatives and similar repositories for cfDNApipe
Users that are interested in cfDNApipe are comparing it to the libraries listed below
Sorting:
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆108Updated 2 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- ☆115Updated last year
- ☆73Updated last month
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- ☆41Updated last year
- ☆43Updated 2 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Tumor Mutational Burden☆58Updated 9 months ago
- ☆72Updated 4 years ago
- ☆116Updated last year
- Clinical interpretation of somatic mutations in cancer☆45Updated 3 months ago
- Microsatellite Analysis for Normal-Tumor InStability☆71Updated 2 years ago
- ☆21Updated last week
- ☆57Updated 5 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆71Updated 4 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- ☆38Updated 5 years ago
- ☆36Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆66Updated 3 weeks ago