TRON-Bioinformatics / tronflow-mutect2Links
Nextflow pipeline for Mutect2 somatic variant calling best practices
☆22Updated last year
Alternatives and similar repositories for tronflow-mutect2
Users that are interested in tronflow-mutect2 are comparing it to the libraries listed below
Sorting:
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- DriverPower☆26Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- ☆36Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 3 weeks ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- PSI-Sigma☆38Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Define regions in the genome☆32Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- ☆21Updated last week
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago