TRON-Bioinformatics / tronflow-mutect2Links
Nextflow pipeline for Mutect2 somatic variant calling best practices
☆22Updated last year
Alternatives and similar repositories for tronflow-mutect2
Users that are interested in tronflow-mutect2 are comparing it to the libraries listed below
Sorting:
- A Nextflow workflow for HLA typing using HLA-HD☆13Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- DNA copy number detection from off-target sequence data☆33Updated 7 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 5 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated last week
- DriverPower☆26Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated 2 years ago
- ☆23Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- ☆26Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- ☆34Updated 2 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Define regions in the genome☆33Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆12Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- PSI-Sigma☆39Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year