Alternatives and similar repositories for tronflow-mutect2

Users that are interested in tronflow-mutect2 are comparing it to the libraries listed below

• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆62Updated last month
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆24Updated 3 months ago
• FJD-CEPH / aCNViewer
  Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
  ☆29Updated 6 years ago
• mskcc / ngs-filters
  Filters for false-positive mutation calls in NGS
  ☆34Updated 6 years ago
• davetang / defining_genomic_regions
  Define regions in the genome
  ☆33Updated 3 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 10 months ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆31Updated 2 years ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated last year
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆33Updated 5 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• umccr / vcf_stuff
  📊Evaluating, filtering, comparing, and visualising VCF
  ☆28Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆45Updated 3 years ago
• TRON-Bioinformatics / tronflow-hla-hd
  A Nextflow workflow for HLA typing using HLA-HD
  ☆11Updated last year
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆42Updated last year
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• eyzhao / hrdetect-pipeline
  ☆36Updated 6 years ago
• ChrisMaherLab / INTEGRATE-Neo
  ☆19Updated 7 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 7 years ago
• PeeperLab / CopywriteR
  DNA copy number detection from off-target sequence data
  ☆32Updated 7 years ago
• sdchandra / CNAclinic
  ☆26Updated last year
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆28Updated 3 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 4 months ago
• wososa / PSI-Sigma
  PSI-Sigma
  ☆38Updated 2 years ago