jvrana / primer3-py-plusView external linksLinks
A easy-to-use Python API for Primer3 primer design.
☆16Nov 10, 2022Updated 3 years ago
Alternatives and similar repositories for primer3-py-plus
Users that are interested in primer3-py-plus are comparing it to the libraries listed below
Sorting:
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- finding conserved regions in highly diverse genomes☆15Jun 1, 2025Updated 8 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 3 months ago
- Simple oligo analysis and primer design☆190Jan 26, 2026Updated 2 weeks ago
- 🧬 Unique (& conserved) DNA sequence identification☆14Jul 7, 2025Updated 7 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- ☆15May 1, 2025Updated 9 months ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated last year
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆47May 21, 2017Updated 8 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- ☆13May 30, 2023Updated 2 years ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Feb 4, 2026Updated last week
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Jun 4, 2025Updated 8 months ago
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 7 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Oct 30, 2024Updated last year
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆14Apr 29, 2023Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated 3 weeks ago
- Primer design for standard PCR, bisulphite PCR, QPCR and sequencing☆13Nov 23, 2018Updated 7 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- A guide to running MaxQuant in Linux☆35Feb 10, 2020Updated 6 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Webapp for design DNA primers for miRNA qPCR process☆15Apr 18, 2017Updated 8 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23May 22, 2025Updated 8 months ago
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- ☆36Mar 16, 2021Updated 4 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆50Aug 9, 2025Updated 6 months ago
- a R package to identify neoantigens from NGS data☆19Jun 29, 2017Updated 8 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆81Dec 5, 2022Updated 3 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 3 years ago
- Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).☆275May 14, 2025Updated 9 months ago
- A python package to analyse qPCR data for single-use or high-throughput application☆26Apr 22, 2025Updated 9 months ago