A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
☆12Apr 25, 2023Updated 2 years ago
Alternatives and similar repositories for detectIS
Users that are interested in detectIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jun 23, 2021Updated 4 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- ☆10May 14, 2025Updated 10 months ago
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 7 years ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆22Jan 30, 2026Updated 2 months ago
- ☆26Aug 8, 2024Updated last year
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- ☆13Jun 7, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Benchmarking of CNV calling tools☆18May 18, 2019Updated 6 years ago
- Moved to: https://github.com/maxplanck-ie/parkour2☆32Aug 24, 2022Updated 3 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Nov 10, 2025Updated 5 months ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 6 years ago
- A cross-package Bioconductor workflow for analysing methylation array data☆11Mar 31, 2017Updated 9 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 8 months ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- An example of bundling webR as part of an application using webpack.☆14Nov 3, 2023Updated 2 years ago
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆18Feb 26, 2026Updated last month
- ☆14Oct 3, 2017Updated 8 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated last year
- Demo App: https://rinpharma.shinyapps.io/clinsight/ Development version website: https://openpharma.github.io/clinsight/dev☆12Mar 3, 2026Updated last month
- An innovative application designed to help pharmacists and pharmacy students quickly research FDA-approved drugs by retrieving relevant i…☆24Mar 24, 2025Updated last year
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Calculate how many points are within a radius using Leaflet☆12Jun 24, 2015Updated 10 years ago
- ☆11Sep 22, 2021Updated 4 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 7 months ago
- AWS Comprehend Client☆12Dec 9, 2025Updated 4 months ago