AstraZeneca / detectIS
A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
☆12Updated last year
Alternatives and similar repositories for detectIS:
Users that are interested in detectIS are comparing it to the libraries listed below
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Annotating principal splice isoforms☆14Updated 5 months ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 2 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 10 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- ☆21Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆30Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- This BLENDER has been sunsetted☆16Updated 5 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- (WIP) best-practices workflow for rare disease☆60Updated 8 months ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆24Updated last week
- ☆15Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 3 years ago
- A python package and a set of shell commands to handle GTF files☆46Updated 8 months ago