AstraZeneca / detectIS
A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
☆12Updated last year
Alternatives and similar repositories for detectIS:
Users that are interested in detectIS are comparing it to the libraries listed below
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated last month
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated 10 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 4 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Updated 9 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- This BLENDER has been sunsetted☆16Updated 6 months ago
- Annotating principal splice isoforms☆14Updated 6 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 10 months ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 7 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 9 months ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 3 weeks ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago