AstraZeneca / detectISLinks
A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
☆12Updated 2 years ago
Alternatives and similar repositories for detectIS
Users that are interested in detectIS are comparing it to the libraries listed below
Sorting:
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated 3 weeks ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆26Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- A software for calculating telomere length☆72Updated 7 years ago
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- ☆27Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- ☆18Updated 3 years ago