AstraZeneca / detectISLinks
A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
☆12Updated 2 years ago
Alternatives and similar repositories for detectIS
Users that are interested in detectIS are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated this week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 11 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 10 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- ☆25Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Long read to rMATS☆32Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- ☆17Updated 3 weeks ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Python package to annotate and visualize gene fusions.☆64Updated 11 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A software for calculating telomere length☆70Updated 6 years ago