bm2-lab / pTuneosLinks
pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
☆36Updated 3 years ago
Alternatives and similar repositories for pTuneos
Users that are interested in pTuneos are comparing it to the libraries listed below
Sorting:
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 5 months ago
- Fork of the Polysolver project☆31Updated 5 years ago
- ☆48Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- ☆19Updated 7 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- ☆47Updated 4 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- ☆15Updated 2 years ago
- ☆44Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆29Updated 4 years ago
- documentation for trackViewer☆29Updated 5 years ago