bm2-lab / pTuneos
pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
☆35Updated 3 years ago
Alternatives and similar repositories for pTuneos:
Users that are interested in pTuneos are comparing it to the libraries listed below
- Fork of the Polysolver project☆30Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆24Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆47Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆49Updated 2 years ago
- A computational workflow for exitron splicing identification☆12Updated 5 months ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆35Updated 3 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- A continually expanding collection of RNA-seq tools☆48Updated 4 months ago
- ☆13Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆56Updated 2 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆68Updated 2 months ago
- ☆47Updated last month
- ☆54Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 7 months ago
- ☆43Updated 6 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ☆37Updated 4 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆35Updated 2 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆62Updated last week
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 9 months ago
- ☆24Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week