pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
☆38Nov 14, 2021Updated 4 years ago
Alternatives and similar repositories for pTuneos
Users that are interested in pTuneos are comparing it to the libraries listed below
Sorting:
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 4 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Feb 17, 2023Updated 3 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆115Sep 2, 2024Updated last year
- ☆19Feb 20, 2018Updated 8 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- ☆41Apr 16, 2018Updated 7 years ago
- 🏺 Exploring novel tumor epitope identification☆38Oct 7, 2020Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆89Sep 15, 2025Updated 5 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- ☆24Jun 27, 2017Updated 8 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 3 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- ☆168Feb 23, 2026Updated last week
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆118Aug 19, 2020Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆113Apr 23, 2024Updated last year
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- ☆23May 31, 2022Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 3 weeks ago
- ☆15May 22, 2025Updated 9 months ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Mar 5, 2021Updated 5 years ago
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- Install GISTIC2 by one line code; GISTIC2 docker image☆41May 5, 2023Updated 2 years ago
- An R package to time somatic mutations☆66Dec 12, 2020Updated 5 years ago
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆63Mar 18, 2024Updated last year
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago