bm2-lab / pTuneosLinks
pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
☆36Updated 3 years ago
Alternatives and similar repositories for pTuneos
Users that are interested in pTuneos are comparing it to the libraries listed below
Sorting:
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆49Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 10 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- ☆35Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 8 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- ☆44Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 5 years ago
- ☆38Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- ☆15Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Python package to annotate and visualize gene fusions.☆64Updated 11 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago