oicr-gsi / sequenza
Workflow for Sequenza, cellularity and ploidy
☆19Updated 7 months ago
Alternatives and similar repositories for sequenza:
Users that are interested in sequenza are comparing it to the libraries listed below
- ☆18Updated 7 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆27Updated 2 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- ☆11Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆23Updated 3 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 3 months ago
- Somatic point mutation caller☆28Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- ☆19Updated 3 years ago
- DriverPower☆26Updated last month
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- ☆10Updated 3 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆17Updated 2 years ago
- ☆10Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- ☆19Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Two pass alignment for long reads☆21Updated 3 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago