Workflow for Sequenza, cellularity and ploidy
☆28Jun 11, 2026Updated 4 months ago
Alternatives and similar repositories for sequenza
Users that are interested in sequenza are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Nov 21, 2023Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆22May 9, 2019Updated 7 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- Predicts which missense mutations will drive growth of human cancers☆12Sep 2, 2026Updated 2 months ago
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- Fast method for inferring cancer clonal population structure from SNV data.☆76Jan 20, 2026Updated 9 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆19Oct 5, 2019Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆31Jul 28, 2026Updated 3 months ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆61Jul 19, 2024Updated 2 years ago
- Mutato is a toolkit for mutation analysis using DNA sequencing data☆12Nov 20, 2025Updated 11 months ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆37Sep 3, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package to time somatic mutations☆72Dec 12, 2020Updated 5 years ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated last year
- Annotates variants in MAF with OncoKB annotation.☆146Aug 25, 2026Updated 2 months ago
- MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with …☆13Dec 3, 2020Updated 5 years ago
- Various algorithms for analysing genomics data☆296Updated this week
- Spectral learning for Annotating Chromatin Labels and Epigenomes☆12Dec 15, 2015Updated 10 years ago
- ☆11Aug 30, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆82Jul 12, 2023Updated 3 years ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆12Oct 31, 2024Updated 2 years ago
- ☆11May 21, 2024Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆91Updated this week
- mSINGS: Detecting Microsatellite Instability By Next-Generation Sequencing This project provides a program with a command-line interfa…☆11Jun 6, 2023Updated 3 years ago
- 癌症相关学习内容☆48Aug 9, 2019Updated 7 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 4 months ago
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Jan 30, 2023Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- ☆11Jun 14, 2023Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆222Mar 20, 2024Updated 2 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Building a Singularity image of Polysolver☆10Dec 13, 2019Updated 6 years ago