Workflow for Sequenza, cellularity and ploidy
☆28Jun 11, 2026Updated 3 months ago
Alternatives and similar repositories for sequenza
Users that are interested in sequenza are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Nov 21, 2023Updated 2 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆22May 9, 2019Updated 7 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated 3 weeks ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 21, 2024Updated 2 years ago
- ASCAT R package☆204Feb 12, 2026Updated 7 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- ☆15Apr 20, 2023Updated 3 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆77Jan 20, 2026Updated 8 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 4 months ago
- ☆17Jul 19, 2024Updated 2 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 7 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- ☆13Jun 7, 2024Updated 2 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- ☆81Jul 12, 2023Updated 3 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Oct 8, 2024Updated last year
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- alternative splicing analysis pipeline☆20Apr 9, 2021Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated last year
- ☆14Oct 14, 2022Updated 3 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆218Mar 20, 2024Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆17Feb 17, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆19Oct 5, 2019Updated 6 years ago
- Somatic point mutation caller☆34Jan 7, 2026Updated 8 months ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Jan 29, 2026Updated 7 months ago
- mouse_fullStack_annotations☆16Jun 29, 2023Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆66Sep 18, 2026Updated last week