snakemake-workflows / dna-seq-neoantigen-predictionLinks
Snakemake workflow for neoantigen prediction
☆14Updated 2 years ago
Alternatives and similar repositories for dna-seq-neoantigen-prediction
Users that are interested in dna-seq-neoantigen-prediction are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- ☆23Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆22Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- ☆18Updated 4 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆28Updated 11 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- ☆20Updated 6 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- DriverPower☆26Updated 8 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago