Alternatives and similar repositories for dna-seq-neoantigen-prediction

Users that are interested in dna-seq-neoantigen-prediction are comparing it to the libraries listed below

• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆28Updated 3 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• ChrisMaherLab / SV-Hotspot
  ☆9Updated 4 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆19Updated 2 weeks ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆17Updated 11 months ago
• SdeBlank / NanoFG
  Third-generation fusion gene detection
  ☆14Updated last year
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆18Updated 10 months ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 3 months ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• asoltis / MutEnricher
  Somatic coding and non-coding mutation enrichment analysis for tumor WGS data
  ☆11Updated 4 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆17Updated 5 years ago
• TRON-Bioinformatics / tronflow-mutect2
  Nextflow pipeline for Mutect2 somatic variant calling best practices
  ☆22Updated last year
• genemine / iread
  iread
  ☆24Updated 3 years ago
• AlexandrovLab / EnsembleVariantCallingPipeline
  The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…
  ☆13Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• hoffmangroup / polyidus
  Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
  ☆9Updated last year
• bioinform / ecTMB
  ☆18Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 6 months ago
• hliang / cnv-seq
  cnv-seq with custom bugfix
  ☆10Updated 12 years ago