Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
☆18Jun 29, 2021Updated 4 years ago
Alternatives and similar repositories for Clin-mNGS
Users that are interested in Clin-mNGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆14Apr 29, 2023Updated 2 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 6 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- ☆10Jul 13, 2022Updated 3 years ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆69Sep 10, 2023Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- ☆32Aug 9, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- ☆33Apr 17, 2023Updated 2 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 4 months ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆18Feb 26, 2026Updated last month
- Primer design for standard PCR, bisulphite PCR, QPCR and sequencing☆13Nov 23, 2018Updated 7 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 3 years ago
- ☆55Jan 11, 2023Updated 3 years ago
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆29Jun 4, 2024Updated last year
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆47May 21, 2017Updated 8 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆55Mar 12, 2026Updated 2 weeks ago
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- omim database☆27Jun 13, 2024Updated last year
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 5 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- An automatic classification tool for PVS1 interpretation of null variants☆44Mar 4, 2024Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ☆19Jun 23, 2021Updated 4 years ago