AkshathaPrasanna / Clin-mNGS
Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
☆17Updated 3 years ago
Alternatives and similar repositories for Clin-mNGS:
Users that are interested in Clin-mNGS are comparing it to the libraries listed below
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆26Updated 10 months ago
- ☆23Updated 7 months ago
- ☆14Updated 7 years ago
- Multiplex Primer Design☆21Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆20Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- fastx-utils using klib☆18Updated 4 years ago
- Long read to rMATS☆31Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- miRNA-target prediction and PARE-seq based validation tool - uses MapReduce model [Published]☆8Updated 7 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- ☆14Updated 6 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Computes various SV statistics☆14Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 9 months ago
- A transposition caller.☆10Updated last year
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago