AkshathaPrasanna / Clin-mNGS
Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
☆16Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Clin-mNGS
- do some exercise☆11Updated 6 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆22Updated 3 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- cnv-seq with custom bugfix☆11Updated 11 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆20Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 4 years ago
- ☆10Updated last year
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆10Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- CNV Rapid Aberration Detection And Reporting☆11Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- A new tool to infer sex from massively parallel sequencing data.☆15Updated 5 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Somatic point mutation caller☆17Updated 8 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Updated 4 years ago
- fastx-utils using klib☆18Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Computes various SV statistics☆14Updated last year
- ☆14Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago