Alternatives and similar repositories for Clin-mNGS:

Users that are interested in Clin-mNGS are comparing it to the libraries listed below

• hliang / cnv-seq
  cnv-seq with custom bugfix
  ☆11Updated 11 years ago
• sdchandra / CNAclinic
  ☆23Updated 5 months ago
• molgenis / CoNVaDING
  Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…
  ☆20Updated 4 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆32Updated 9 years ago
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆11Updated 3 years ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago
• nriddiford / cnvPlotteR
  Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
  ☆13Updated 4 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆16Updated 7 months ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 6 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 7 months ago
• pzweuj / practice
  do some exercise
  ☆11Updated this week
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• heinc1010 / BAMixChecker
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆14Updated 2 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆29Updated last month
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆21Updated 4 years ago
• fanyucai1 / TMB
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Updated 5 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆20Updated 2 years ago
• mccoy-lab / LD-PGTA
  Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…
  ☆16Updated 2 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆24Updated 9 years ago
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 7 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 6 months ago
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 4 years ago
• bioinform / ecTMB
  ☆19Updated 3 years ago
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆17Updated 5 years ago
• TranslationalBioinformaticsIGTP / CNVbenchmarkeR
  Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data
  ☆14Updated 3 weeks ago
• wingolab-org / mpd-c
  Multiplex Primer Design
  ☆20Updated 4 years ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 3 years ago
• cancer-genomics / gemini_wflow
  ☆10Updated last year
• RacconC / gtftools
  ☆13Updated last year