AkshathaPrasanna / Clin-mNGSLinks
Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
☆18Updated 4 years ago
Alternatives and similar repositories for Clin-mNGS
Users that are interested in Clin-mNGS are comparing it to the libraries listed below
Sorting:
- A new tool to infer sex from massively parallel sequencing data.☆17Updated last month
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- ☆24Updated 10 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- fastx-utils using klib☆18Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Updated 7 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Long read to rMATS☆31Updated 2 years ago
- ☆14Updated 7 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆17Updated 2 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ☆14Updated 7 years ago
- Computes various SV statistics☆14Updated last year
- ☆16Updated 3 years ago