ICBI / neoantigeRLinks
a R package to identify neoantigens from NGS data
☆19Updated 7 years ago
Alternatives and similar repositories for neoantigeR
Users that are interested in neoantigeR are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 10 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- ☆23Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 10 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 9 months ago