ICBI / neoantigeR
a R package to identify neoantigens from NGS data
☆19Updated 7 years ago
Alternatives and similar repositories for neoantigeR:
Users that are interested in neoantigeR are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- DNA copy number detection from off-target sequence data☆30Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Comprehensive Human Expressed SequenceS☆16Updated 6 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆27Updated 5 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- HOT regions paper☆11Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- DriverPower☆26Updated last month
- ☆40Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago