ICBI / neoantigeRLinks
a R package to identify neoantigens from NGS data
☆19Updated 8 years ago
Alternatives and similar repositories for neoantigeR
Users that are interested in neoantigeR are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- DriverPower☆26Updated 8 months ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆78Updated 5 years ago
- Website for the precision medicine workshop☆45Updated 3 weeks ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 2 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- documentation for trackViewer☆29Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago