karel-brinda / ococoLinks
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
☆46Updated 6 years ago
Alternatives and similar repositories for ococo
Users that are interested in ococo are comparing it to the libraries listed below
Sorting:
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆28Updated 5 months ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 8 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 4 months ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated 8 months ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- ☆18Updated 8 years ago
- Find Unique genomic Regions☆30Updated 2 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 weeks ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated this week