Alternatives and similar repositories for psdm

Users that are interested in psdm are comparing it to the libraries listed below

• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆61Updated 3 weeks ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 7 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆25Updated 10 months ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆31Updated 2 weeks ago
• iqbal-lab-org / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆20Updated 9 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated last month
• kangxiongbin / HyLight
  HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…
  ☆12Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated last week
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 4 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆52Updated 5 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆26Updated last month
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆43Updated 2 years ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆15Updated last month
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated 7 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 4 months ago
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated last month
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆37Updated last year
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated 9 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆54Updated last week
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆23Updated this week
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆16Updated 2 weeks ago
• jlumpe / gambit
  A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
  ☆34Updated 9 months ago
• husonlab / phylosketch2
  Sketch phylogenetic trees and networks
  ☆22Updated last month
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last week
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆20Updated 9 months ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated last month
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 2 months ago
• Plant-Food-Research-Open / genepal
  A Nextflow pipeline for genome and pan-genome annotation
  ☆15Updated 2 months ago
• lmc297 / BTyper3
  In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
  ☆20Updated last year