Alternatives and similar repositories for psdm:

Users that are interested in psdm are comparing it to the libraries listed below

• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 5 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆20Updated this week
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 2 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆47Updated last month
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆36Updated 3 months ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆15Updated 2 weeks ago
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆20Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 9 months ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆27Updated 9 months ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆14Updated 2 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆41Updated 2 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated 3 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated last week
• rpetit3 / assembly-scan
  Generate basic stats for an assembly.
  ☆10Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated this week
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆25Updated last month
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated this week
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆20Updated 2 weeks ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆29Updated this week
• althonos / orthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆19Updated last month
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 2 months ago
• tseemann / berokka
  🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
  ☆26Updated 5 years ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• dhelekal / CaveDive
  ☆17Updated 7 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆21Updated 2 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 7 months ago
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆31Updated 2 months ago