Pan-genome inference and genotyping with long noisy or short accurate reads
☆120Dec 13, 2024Updated last year
Alternatives and similar repositories for pandora
Users that are interested in pandora are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 11 months ago
- Bifrost graph gene caller.☆100Aug 31, 2026Updated last week
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆223Aug 27, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆226Aug 11, 2026Updated 3 weeks ago
- SEER, reimplemented in python 🐍🔮☆138Jul 23, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- An updated pipeline for pangenome investigation☆374Jul 2, 2026Updated 2 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- Pan-genome Seed Index☆20Jul 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- Recombination-free trees☆72Jul 24, 2026Updated last month
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 7 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆40Aug 7, 2026Updated 3 weeks ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 2 years ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023