Pan-genome inference and genotyping with long noisy or short accurate reads
☆121Dec 13, 2024Updated last year
Alternatives and similar repositories for pandora
Users that are interested in pandora are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to create a PRG from a Multiple Sequence Alignment file☆26Sep 10, 2025Updated last year
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆227Aug 11, 2026Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- SEER, reimplemented in python 🐍🔮☆141Oct 12, 2026Updated 3 weeks ago
- Variant call verification☆19May 12, 2025Updated last year
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- An updated pipeline for pangenome investigation☆379Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated 2 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Oct 23, 2026Updated 2 weeks ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆115Oct 12, 2026Updated 3 weeks ago
- Pan-genome Seed Index☆20Jul 3, 2026Updated 4 months ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆213Aug 11, 2025Updated last year
- alignment to variation graph inducer☆166Jul 29, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Build a partitioned pangenome graph from microbial genomes☆313Oct 30, 2026Updated last week
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Nov 10, 2021Updated 4 years ago
- ☆291Dec 29, 2025Updated 10 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆113Jun 19, 2026Updated 4 months ago
- Uses cDBG to count unitigs in bacterial populations☆20Feb 15, 2023Updated 3 years ago
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Split k-mer analysis – version 2☆110Oct 20, 2026Updated 2 weeks ago
- Recombination-free trees☆76Jul 24, 2026Updated 3 months ago
- Split Kmer Analysis☆68May 26, 2022Updated 4 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆129Oct 28, 2026Updated last week
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 7 years ago