ChristopherWilks / megadepthLinks
BigWig and BAM utilities
☆98Updated last year
Alternatives and similar repositories for megadepth
Users that are interested in megadepth are comparing it to the libraries listed below
Sorting:
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated last year
- Genomic Association Tester☆32Updated 2 years ago
- ☆78Updated 11 years ago
- Precision HLA typing from next-generation sequencing data☆73Updated 2 weeks ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Reference genome resource manager☆74Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- QDNAseq package for Bioconductor☆52Updated last year
- Tools for analyzing DNA methylation data☆44Updated this week
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- A software for calculating telomere length☆72Updated 7 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week