ChristopherWilks / megadepth
BigWig and BAM utilities
☆92Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for megadepth
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 5 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- Tip and tricks for BAM files☆82Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated 3 weeks ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated 2 weeks ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆78Updated 2 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- R package designed to simplify structural variant analysis☆69Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 7 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆67Updated 2 years ago
- Publication quality NGS track plotting☆106Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆51Updated 2 weeks ago
- Maximum likelihood demultiplexing☆46Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- ☆78Updated 10 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆68Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago