ChristopherWilks / megadepthLinks
BigWig and BAM utilities
☆96Updated last year
Alternatives and similar repositories for megadepth
Users that are interested in megadepth are comparing it to the libraries listed below
Sorting:
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 8 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 3 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- A read extraction and realignment tool for next generation sequencing data☆100Updated 2 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 7 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- Genomic Association Tester☆31Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- ☆95Updated 2 years ago
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- Reference genome resource manager☆76Updated last year
- (WIP) best-practices workflow for rare disease☆60Updated last year
- A software for calculating telomere length☆70Updated 6 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆44Updated last week
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Tools for analyzing DNA methylation data☆42Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago