HadrienG / nanoflowLinks
De novo assembly of nanopore reads using nextflow
☆20Updated 5 years ago
Alternatives and similar repositories for nanoflow
Users that are interested in nanoflow are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- VIGOR4☆21Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- transposable element typing pipeline☆19Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 5 months ago
- ☆12Updated 8 months ago
- Read contamination removal☆25Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago