HadrienG / nanoflowLinks
De novo assembly of nanopore reads using nextflow
☆20Updated 5 years ago
Alternatives and similar repositories for nanoflow
Users that are interested in nanoflow are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- VIGOR4☆21Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- transposable element typing pipeline☆19Updated last year
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- ☆12Updated 9 months ago
- Read contamination removal☆25Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- genomic alignment similarity search tool☆18Updated 7 months ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago