MarioniLab / EmptyDrops2017Links
Code for the empty droplet and cell detection project from the HCA Hackathon.
☆21Updated 6 years ago
Alternatives and similar repositories for EmptyDrops2017
Users that are interested in EmptyDrops2017 are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- ☆28Updated 6 years ago
- ☆22Updated 4 years ago
- ☆34Updated 6 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 3 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- scover☆24Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆17Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago