MarioniLab / EmptyDrops2017Links
Code for the empty droplet and cell detection project from the HCA Hackathon.
☆21Updated 6 years ago
Alternatives and similar repositories for EmptyDrops2017
Users that are interested in EmptyDrops2017 are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- ☆28Updated 6 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ☆34Updated 6 years ago
- ☆17Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆22Updated 4 years ago
- ☆19Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆51Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Clone identification from single-cell data☆61Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆24Updated 9 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆21Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year