immunogenomics / TCAT_analysisLinks
Code repository for TCAT analyses
☆14Updated 4 months ago
Alternatives and similar repositories for TCAT_analysis
Users that are interested in TCAT_analysis are comparing it to the libraries listed below
Sorting:
- a simple R data package for curated cancer pathway-specific gene lists☆13Updated 5 years ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆28Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Updated 9 months ago
- ☆25Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Updated last month
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Updated 2 years ago
- ☆11Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆37Updated 3 years ago
- single-cell Contamination Detection and Correction☆16Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 11 months ago
- ☆22Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 5 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- Code used to process the data of the HBCA project☆32Updated last year
- ☆25Updated 2 years ago
- ☆16Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆25Updated 4 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 10 months ago
- ☆13Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- ☆10Updated last year
- Integration of gut cell atlases☆33Updated 3 months ago