natsuhiko / rasqualView external linksLinks
Robust Allele Specific Quantification and quality controL
☆40Dec 13, 2021Updated 4 years ago
Alternatives and similar repositories for rasqual
Users that are interested in rasqual are comparing it to the libraries listed below
Sorting:
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆27Feb 4, 2017Updated 9 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Aug 20, 2024Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆19Jun 11, 2024Updated last year
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Oct 24, 2019Updated 6 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Functional genomics and genome-wide association studies☆69Jul 24, 2018Updated 7 years ago
- A complete tool set for molecular QTL discovery and analysis☆60Apr 16, 2024Updated last year
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆71Mar 19, 2023Updated 2 years ago
- ☆20Jul 28, 2025Updated 6 months ago
- ☆18Mar 12, 2024Updated last year
- Calculates allelic Fold Change (aFC) using standard input files for fastQTL.☆26Jun 30, 2022Updated 3 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆20Jan 25, 2023Updated 3 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆111Apr 23, 2021Updated 4 years ago
- Ultrafast GPU-enabled QTL mapper☆203Jun 29, 2025Updated 7 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆48Updated this week
- GridLMM package☆39Oct 16, 2025Updated 3 months ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 3 weeks ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- ☆26May 16, 2025Updated 8 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21May 9, 2023Updated 2 years ago
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 9 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 2 months ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- ☆14Mar 17, 2022Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago