Functional genomics and genome-wide association studies
☆70Jul 24, 2018Updated 7 years ago
Alternatives and similar repositories for fgwas
Users that are interested in fgwas are comparing it to the libraries listed below
Sorting:
- ☆22Jan 13, 2017Updated 9 years ago
- Pariwise analysis of GWAS☆46Sep 27, 2018Updated 7 years ago
- Fast, integrative fine mapping with functional data☆61Aug 22, 2019Updated 6 years ago
- ☆14Jul 18, 2021Updated 4 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Feb 11, 2023Updated 3 years ago
- ☆40Jan 24, 2018Updated 8 years ago
- software package for integrative genetic association analysis☆35Jul 8, 2023Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Aug 30, 2023Updated 2 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- LD Score Regression (LDSC)☆768Jan 16, 2026Updated 2 months ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 11 years ago
- Robust Allele Specific Quantification and quality controL☆40Dec 13, 2021Updated 4 years ago
- Code for the in-dev PrediXcan Project☆28Oct 17, 2022Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆20Jun 11, 2024Updated last year
- ☆10Jan 20, 2023Updated 3 years ago
- ☆64Dec 30, 2021Updated 4 years ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆13Mar 27, 2021Updated 4 years ago
- ☆14Aug 30, 2025Updated 6 months ago
- An interactive graphical illustration of genetic associations and their biological context☆17Mar 14, 2024Updated 2 years ago
- ☆196May 2, 2022Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 3 years ago
- Identify cell types and pathways affected by genetic risk loci.☆36Feb 29, 2024Updated 2 years ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- Assessing enrichment of complex disease or trait associations among QTLs☆15Jun 15, 2020Updated 5 years ago
- Genetics ToolboX R package☆32Feb 10, 2020Updated 6 years ago
- Code for implementing Mendelian randomization investigations☆20Nov 9, 2015Updated 10 years ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Apr 16, 2018Updated 7 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Feb 23, 2026Updated 3 weeks ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Jun 17, 2025Updated 9 months ago
- PrediXcan Project☆117Oct 17, 2022Updated 3 years ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- A factor analysis package☆106May 8, 2012Updated 13 years ago
- Format of GWAS summary statistics.☆12Jul 31, 2024Updated last year
- ☆93Jul 21, 2025Updated 7 months ago
- ☆40Mar 12, 2026Updated last week
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago