aertslab / popscle_helper_tools
Helper tools for popscle
☆20Updated last year
Related projects ⓘ
Alternatives and complementary repositories for popscle_helper_tools
- Framework for sensitive DE testing (using neighbourhoods)☆58Updated 3 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆22Updated last week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Cell type pipes for R☆51Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆59Updated last year
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated 11 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Single Cell Analysis of Five'Ends☆44Updated 7 months ago
- ☆37Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆68Updated 3 years ago
- Normalize CITEseq Data☆63Updated 4 months ago
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- ☆53Updated 3 years ago
- Clone identification from single-cell data☆59Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- Functions for single cell data analysis☆26Updated 3 years ago
- ☆39Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆23Updated 3 years ago