aertslab / popscle_helper_tools
Helper tools for popscle
☆20Updated 2 years ago
Alternatives and similar repositories for popscle_helper_tools:
Users that are interested in popscle_helper_tools are comparing it to the libraries listed below
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆54Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- ☆61Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Functional Inference of Gene Regulation☆43Updated 9 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆46Updated last month
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- scWGCNA☆59Updated 2 years ago
- Functions for single cell data analysis☆31Updated 3 years ago