Alternatives and similar repositories for demuxalot:

Users that are interested in demuxalot are comparing it to the libraries listed below

• FertigLab / CancerInSilico
  An R package for running cell-based models
  ☆8Updated 5 years ago
• merfishtools / merfishtools
  MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…
  ☆14Updated 5 years ago
• arogozhnikov / rtg_score
  Rank-To-Group score evaluates contribution of confounding factors
  ☆21Updated 3 years ago
• chanzuckerberg / ExpressionMatrix2
  Software for exploration of gene expression data from single-cell RNA sequencing.
  ☆28Updated 5 years ago
• normjam / benchmark
  Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
  ☆19Updated 5 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆23Updated 9 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆58Updated 3 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆44Updated 5 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆24Updated 3 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 5 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆28Updated this week
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 8 months ago
• KlugerLab / deepcytof
  ☆18Updated 7 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆43Updated 10 months ago
• tare / Splotch
  Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
  ☆17Updated 3 weeks ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• linnarsson-lab / loom-viewer
  Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
  ☆35Updated 3 weeks ago
• dcroote / singlecell-ige
  Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
  ☆10Updated 3 years ago
• jhsiao999 / peco
  Predict cell cycle phase in a continuum from single-cell RNA-seq data
  ☆12Updated 4 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆19Updated 10 months ago
• insitro / AllelicSeries
  Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…
  ☆13Updated 3 weeks ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆28Updated 2 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆37Updated 9 months ago