arogozhnikov / demuxalotLinks
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
☆25Updated 3 months ago
Alternatives and similar repositories for demuxalot
Users that are interested in demuxalot are comparing it to the libraries listed below
Sorting:
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- easy access to benchmark datasets☆50Updated 7 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆12Updated 4 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆21Updated 8 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 3 weeks ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- ☆29Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆59Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆57Updated 3 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated 3 weeks ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- ☆20Updated 8 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- ☆21Updated 8 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- PROGENY Python implementation☆12Updated 3 years ago