Alternatives and similar repositories for demuxalot

Users that are interested in demuxalot are comparing it to the libraries listed below

• arogozhnikov / rtg_score

  View on GitHub
  Rank-To-Group score evaluates contribution of confounding factors
  ☆22Nov 3, 2021Updated 4 years ago
• ewengillies / track-finding-yandex

  View on GitHub
  COMET Tracking : Machine Learning Approaches
  ☆10Aug 27, 2018Updated 7 years ago
• jonas-fuchs / MSAexplorer

  View on GitHub
  A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.
  ☆23Dec 8, 2025Updated 2 months ago
• kieranrcampbell / ouijaflow

  View on GitHub
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Oct 5, 2017Updated 8 years ago
• cytomining / CytoTable

  View on GitHub
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆17Updated this week
• AllenInstitute / NucCellTypes

  View on GitHub
  ☆13Nov 13, 2018Updated 7 years ago
• statgen / popscle

  View on GitHub
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆58May 5, 2021Updated 4 years ago
• hammerlab / t-cell-guide

  View on GitHub
  Human Primary T cells: A Practical Guide
  ☆15Sep 18, 2018Updated 7 years ago
• MangiolaLaboratory / HPCell

  View on GitHub
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆16Dec 18, 2024Updated last year
• immunogenomics / singlecellmethods

  View on GitHub
  Collection of useful methods for single cell analysis
  ☆15Aug 22, 2024Updated last year
• pachterlab / kite

  View on GitHub
  kallisto index tag extractor
  ☆20Jul 6, 2019Updated 6 years ago
• leekgroup / networks_correction

  View on GitHub
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Apr 22, 2019Updated 6 years ago
• COMBINE-lab / EDS

  View on GitHub
  A simple, intuitive and Efficient single cell binary Data Storage format
  ☆15Oct 10, 2019Updated 6 years ago
• jyyulab / scMINER

  View on GitHub
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆22Aug 28, 2025Updated 5 months ago
• Teichlab / celloline

  View on GitHub
  ☆20Mar 28, 2017Updated 8 years ago
• dcgerard / vicar

  View on GitHub
  Various Ideas for Confounder Adjustment in Regression
  ☆24May 8, 2023Updated 2 years ago
• quentinblampey / spatialdata_xenium_explorer

  View on GitHub
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Jul 31, 2024Updated last year
• christopherBelter / nih_reporter_api

  View on GitHub
  R code to work with the NIH RePORTER API
  ☆11Apr 16, 2025Updated 10 months ago
• HumanCellAtlas / sctools

  View on GitHub
  Utilities for large scale distributed single cell data processing
  ☆24Jan 20, 2026Updated 3 weeks ago
• dkobak / finer-tsne

  View on GitHub
  Code for the paper on t-SNE with variable degree of freedom
  ☆25Aug 5, 2020Updated 5 years ago
• arogozhnikov / readable_capsnet

  View on GitHub
  Blazingly fast capsule networks in 75 lines of pytorch+einops
  ☆28Sep 23, 2021Updated 4 years ago
• statgen / demuxlet

  View on GitHub
  Genetic multiplexing of barcoded single cell RNA-seq
  ☆132Jul 1, 2024Updated last year
• Dowell-Lab / srworkshop

  View on GitHub
  Scripts and files for the annual Short Read Analysis Workshop
  ☆12Jul 21, 2025Updated 6 months ago
• ImperialCollegeLondon / RCDS-data-exploration

  View on GitHub
  Imperial College London / Graduate School / Data Science / Data Exploration & Visualisation
  ☆10Apr 17, 2024Updated last year
• broadinstitute / single_cell_portal_core

  View on GitHub
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
  ☆70Feb 4, 2026Updated last week
• chaichontat / samui

  View on GitHub
  A performant scientific image visualization system.
  ☆36Jan 21, 2026Updated 3 weeks ago
• EDePasquale / DoubletDecon

  View on GitHub
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Dec 2, 2020Updated 5 years ago
• Teichlab / cellity

  View on GitHub
  ☆38Jul 26, 2016Updated 9 years ago
• dawe / schist

  View on GitHub
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Sep 30, 2025Updated 4 months ago
• stefangolas / PyLynx

  View on GitHub
  ☆15Dec 26, 2025Updated last month
• AllenInstitute / scrattch.bigcat

  View on GitHub
  iterative clustering pipeline of big single cell datasets.
  ☆36Sep 5, 2025Updated 5 months ago
• anders-s-olsen / CopBET

  View on GitHub
  Copenhagen brain entropy toolbox - a set of matlab tools to compute entropy measures in neuroimaging data
  ☆10Jan 7, 2025Updated last year
• Hoohm / CITE-seq-Count

  View on GitHub
  A tool that allows to get UMI counts from a single cell protein assay
  ☆87Apr 23, 2025Updated 9 months ago
• MSingerLab / COMETSC

  View on GitHub
  COMET Single-Cell Marker Detection tool
  ☆32Jun 21, 2022Updated 3 years ago
• KlugerLab / ALRA

  View on GitHub
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Dec 14, 2023Updated 2 years ago
• JEFworks-Lab / CRAWDAD

  View on GitHub
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆40Nov 18, 2025Updated 2 months ago
• shreythecray / lie-detector

  View on GitHub
  Build a Serverless Lie Detector that uses AI for Facial Recognition (with Node.js, Azure Functions, Azure Face API, and Courier API).
  ☆10Sep 7, 2022Updated 3 years ago
• transcend-io / examples

  View on GitHub
  Some examples of integrations with Transcend in various languages.
  ☆11Dec 22, 2025Updated last month
• elixirschool / pointing-party

  View on GitHub
  An example Phoenix real-time web application for pointing cards
  ☆10Jan 4, 2023Updated 3 years ago