FarmGTEx / PigGTEx-Pipeline-v0Links
☆33Updated 3 months ago
Alternatives and similar repositories for PigGTEx-Pipeline-v0
Users that are interested in PigGTEx-Pipeline-v0 are comparing it to the libraries listed below
Sorting:
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆25Updated 3 years ago
- The cattle Genotype-Tissue Expression atlas v1☆27Updated 2 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 6 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆31Updated 11 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- ☆27Updated 3 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 2 months ago
- A tool to visualize the haplotype pattern and various information in excel.☆21Updated 8 months ago
- Example for TWAS☆12Updated 3 years ago
- Notes on SNP-related tools and genome variation analysis☆28Updated 2 months ago
- Structural variant merging tool☆55Updated last year
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Repository for code used for publications☆29Updated 2 weeks ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆35Updated 4 months ago
- TEspeX - pipeline for Transposable Elements expression quantification☆21Updated 2 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 7 months ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆17Updated 3 years ago
- Genome-wide Association Study (GWAS) Tutorial☆40Updated 6 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Updated last year
- ☆23Updated 3 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- ☆15Updated 3 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 6 months ago
- ☆18Updated last year
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Updated 3 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 10 months ago
- TWAS-pipeline☆24Updated 4 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago