FarmGTEx / PigGTEx-Pipeline-v0
☆32Updated last year
Alternatives and similar repositories for PigGTEx-Pipeline-v0:
Users that are interested in PigGTEx-Pipeline-v0 are comparing it to the libraries listed below
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆25Updated 3 years ago
- The cattle Genotype-Tissue Expression atlas v1☆24Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆29Updated 4 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- ☆14Updated 4 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆22Updated last year
- Structural variant merging tool☆49Updated 8 months ago
- tutorial on pggb☆34Updated 3 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆26Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆63Updated last month
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated last month
- BS-seq analysis pipeline☆40Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- Data Simulation for Life Science and Breeding☆37Updated this week
- Working on cotton resequencing☆11Updated 4 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 7 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated last week
- A comprehensive pipeline for RNAseq data analysis☆22Updated 7 months ago
- ☆43Updated last year
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Application of pan-genome for population☆104Updated 6 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- A machine learning-based genotyping tool for structural variation in short reads☆18Updated last week
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Cross-population fine-mapping☆34Updated 4 months ago
- TEspeX - pipeline for Transposable Elements expression quantification☆20Updated last year