a-slide / NanopolishComp
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files
☆10Updated 3 years ago
Related projects: ⓘ
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- Improved Phased Assembler☆27Updated 2 years ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Structural variant caller☆53Updated 2 years ago
- ☆29Updated 3 weeks ago
- ☆45Updated this week
- Remove lambda phage reads from a fastq file☆27Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆26Updated last year
- ☆21Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆17Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆44Updated 3 years ago
- A tool for de novo clustering of long transcriptomic reads☆14Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- ☆51Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated last week
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- catalog for long-read sequencing tools☆32Updated last year
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- ☆31Updated 4 years ago
- ☆12Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Updated 4 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆20Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆47Updated 2 years ago
- ☆45Updated 2 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago