a-slide / NanopolishCompLinks
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files
☆10Updated 4 years ago
Alternatives and similar repositories for NanopolishComp
Users that are interested in NanopolishComp are comparing it to the libraries listed below
Sorting:
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆22Updated 4 years ago
- ☆48Updated last year
- Population-wide Deletion Calling☆35Updated 3 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆21Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Structural variant caller☆54Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 11 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆34Updated 5 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- ☆80Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- ☆21Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago