davemcg / SeeGEM

Related projects ⓘ

Alternatives and complementary repositories for SeeGEM

• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 2 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 2 months ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆17Updated 8 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 11 months ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 5 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 6 years ago
• rhshah / iAnnotateSV
  iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…
  ☆16Updated 2 months ago
• KiddLab / QuicK-mer2
  ☆11Updated last year
• ssadedin / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.
  ☆14Updated 10 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• Genomicsplc / wecall
  Fast, accurate and simple to use command line tool for variant detection in NGS data.
  ☆10Updated 5 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• pyrevo / ClusterScan
  ClusterScan, search for clusters of features in a given annotation.
  ☆11Updated 3 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• annaquaglieri16 / varikondo
  R package to organise and standardise your genomic variant calls obtained with different callers.
  ☆11Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆25Updated 2 months ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 2 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆13Updated 3 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆14Updated 9 months ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• statgen / topmed_freeze3_calling
  TOPMed Freeze 3 variant calling pipeline
  ☆10Updated 5 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 8 years ago
• RausellLab / CNVxplorer
  A webtool for the clinical interpretation of CNVs in rare disease patients
  ☆12Updated 2 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last month