davemcg / SeeGEMLinks
Interactive table from gemini output
☆10Updated 6 years ago
Alternatives and similar repositories for SeeGEM
Users that are interested in SeeGEM are comparing it to the libraries listed below
Sorting:
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 6 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆15Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last week
- Rcount: simple and flexible RNA-Seq read counting☆12Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- Genomic plot in trellis layout☆42Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 13 years ago