Interactive table from gemini output
☆10Mar 5, 2019Updated 6 years ago
Alternatives and similar repositories for SeeGEM
Users that are interested in SeeGEM are comparing it to the libraries listed below
Sorting:
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Website to analyze conflicting assertions in ClinVar☆19Jan 24, 2026Updated last month
- ☆25Apr 29, 2018Updated 7 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- ☆19Jul 28, 2025Updated 7 months ago
- Shiny ClinVar web server source code☆12Apr 29, 2019Updated 6 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 10 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- R htmlwidget package for ideogram.js☆15Oct 26, 2022Updated 3 years ago
- ☆13Dec 19, 2018Updated 7 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Feb 20, 2021Updated 5 years ago
- analysis pipeline for CODEC data☆13Oct 27, 2025Updated 4 months ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 8 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- FusionAnnotator source code☆16Aug 27, 2023Updated 2 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- Resource of human chromosome schematics & images☆95Sep 4, 2024Updated last year
- FUSE filesystem for the DNAnexus storage system☆13Jan 26, 2026Updated last month
- A simple class for storing UTF-8 strings☆16Jan 24, 2024Updated 2 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Dec 6, 2025Updated 2 months ago