davemcg / SeeGEM
Interactive table from gemini output
☆10Updated 6 years ago
Alternatives and similar repositories for SeeGEM:
Users that are interested in SeeGEM are comparing it to the libraries listed below
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last week
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated 3 weeks ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Unfazed by genomic variant phasing☆26Updated 10 months ago
- TOPMed Freeze 3 variant calling pipeline☆9Updated 6 years ago
- Explore and filter structural variant calls from Lumpy and Delly VCF files☆8Updated 4 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- Genomic plot in trellis layout☆39Updated last year
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- ☆11Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 4 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago