davemcg / SeeGEM
Interactive table from gemini output
☆10Updated 5 years ago
Alternatives and similar repositories for SeeGEM:
Users that are interested in SeeGEM are comparing it to the libraries listed below
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Allele frequency filter app☆14Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 2 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- ☆23Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆11Updated last year
- ☆11Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 4 months ago
- TOPMed Freeze 3 variant calling pipeline☆9Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Explore and filter structural variant calls from Lumpy and Delly VCF files☆8Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago