BCM-Lupskilab / HMZDelFinderLinks
CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data
☆12Updated 6 years ago
Alternatives and similar repositories for HMZDelFinder
Users that are interested in HMZDelFinder are comparing it to the libraries listed below
Sorting:
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated last month
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- ☆30Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆34Updated 5 years ago