A high performance tool to identify orthologs and paralogs across genomes.
☆26Mar 8, 2023Updated 3 years ago
Alternatives and similar repositories for SwiftOrtho
Users that are interested in SwiftOrtho are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- Dinoflagellate Annotation Workflow☆15Jun 4, 2026Updated last month
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 3 months ago
- Detection and genotyping of structural variants☆22May 27, 2026Updated 2 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Linear-time de novo Long Read Assembler☆42Mar 19, 2026Updated 4 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- ☆16Jul 7, 2025Updated last year
- ☆12Jun 12, 2023Updated 3 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- MView extracts and reformats the results of a sequence database search or multiple alignment.☆33Sep 8, 2024Updated last year
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.☆21Mar 5, 2023Updated 3 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- ☆12Feb 14, 2023Updated 3 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- ☆12Feb 16, 2026Updated 5 months ago
- Phylogenetic orthology inference for comparative genomics☆865Jul 15, 2025Updated last year
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆36Dec 24, 2020Updated 5 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆99Updated this week
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 2 months ago
- Nanopore data assembler☆170Mar 27, 2022Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- ☆36Aug 18, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated 11 months ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆111Nov 12, 2025Updated 8 months ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago