Rinoahu / SwiftOrthoLinks
A high performance tool to identify orthologs and paralogs across genomes.
☆26Updated 2 years ago
Alternatives and similar repositories for SwiftOrtho
Users that are interested in SwiftOrtho are comparing it to the libraries listed below
Sorting:
- ☆32Updated 4 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆27Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆25Updated 10 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Genome-Genome circle synteny☆25Updated last year
- ☆26Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆21Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago