Alternatives and similar repositories for jmodeltest2

Users that are interested in jmodeltest2 are comparing it to the libraries listed below

• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆83Updated 2 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 6 months ago
• caitiecollins / treeWAS
  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
  ☆106Updated 10 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated 2 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆24Updated 2 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆120Updated 2 years ago
• ddarriba / modeltest
  Best-fit model selection
  ☆85Updated last year
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆70Updated 4 years ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆86Updated 3 years ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆67Updated 5 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated last year
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆93Updated 3 weeks ago
• MadsAlbertsen / multi-metagenome
  Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
  ☆80Updated 9 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• nylander / catfasta2phyml
  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
  ☆74Updated last year
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆93Updated last year
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆50Updated last year
• mjsull / Easyfig
  Development version of Easyfig
  ☆102Updated 2 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 11 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆132Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆118Updated last year
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 5 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆104Updated last month
• alipirani88 / Comparative_Genomics
  Micro 612 genomics workshop
  ☆38Updated 4 years ago
• alexcritschristoph / Qiime16sTutorial
  A tutorial on methods of 16S analysis with QIIME 1
  ☆71Updated 6 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆122Updated this week
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆114Updated 8 months ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆117Updated 4 years ago