aberer / RogueNaRok
A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index
☆22Updated 3 years ago
Alternatives and similar repositories for RogueNaRok:
Users that are interested in RogueNaRok are comparing it to the libraries listed below
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- spruceup☆24Updated 8 months ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- ☆22Updated 11 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆17Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆39Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A set of scripts for calculating pairwise SNP distance☆40Updated 2 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆12Updated 11 months ago
- A tool to root phylogenies☆19Updated 7 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆13Updated 9 months ago
- ☆18Updated 4 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated last year
- ☆12Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆18Updated 2 years ago
- Recombination-free trees☆58Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- ☆26Updated 4 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 6 years ago