beagle-dev / beagle-libLinks
general purpose library for evaluating the likelihood of sequence evolution on trees
☆141Updated last month
Alternatives and similar repositories for beagle-lib
Users that are interested in beagle-lib are comparing it to the libraries listed below
Sorting:
- Best-fit model selection☆85Updated last year
- Efficient phylogenomic software by maximum likelihood☆203Updated 4 years ago
- Bayesian Evolutionary Analysis Sampling Trees☆232Updated last week
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆173Updated 3 weeks ago
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆145Updated 9 months ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆95Updated 4 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆248Updated this week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated 2 weeks ago
- Convert various sequence formats to FASTA☆140Updated last week
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆256Updated 8 months ago
- Bayesian Evolutionary Analysis by Sampling Trees☆261Updated 3 weeks ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆142Updated last month
- Posterior summarisation in Bayesian phylogenetics☆66Updated 2 months ago
- Programs to analyse NGS data for population genetics purposes☆178Updated last year
- A variational framework for inferring population structure from SNP genotype data.☆142Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Updated 2 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Updated 5 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆193Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆146Updated this week
- A tool to circularize genome assemblies☆249Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Find all significant local alignments between reads☆141Updated last year
- ☆68Updated 2 years ago
- PAired-eND Assembler for DNA sequences☆137Updated 4 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆274Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆118Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆207Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago