beagle-dev / beagle-libLinks
general purpose library for evaluating the likelihood of sequence evolution on trees
☆142Updated 2 weeks ago
Alternatives and similar repositories for beagle-lib
Users that are interested in beagle-lib are comparing it to the libraries listed below
Sorting:
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆95Updated 5 months ago
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆147Updated last week
- Convert various sequence formats to FASTA☆145Updated 3 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆174Updated 2 months ago
- Best-fit model selection☆87Updated last year
- Bayesian Evolutionary Analysis Sampling Trees☆233Updated this week
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆257Updated last week
- software for UCE (and general) phylogenomics☆87Updated last month
- Posterior summarisation in Bayesian phylogenetics☆66Updated 3 months ago
- Efficient phylogenomic software by maximum likelihood☆204Updated 4 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated last week
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆249Updated last month
- Bayesian Evolutionary Analysis by Sampling Trees☆266Updated 2 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆150Updated 2 weeks ago
- shell tools for processing phylogenetic trees☆117Updated 3 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 2 weeks ago
- Calculate summary statistics and manipulate multiple sequence alignments☆90Updated last year
- ☆131Updated 2 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆20Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- Qiita - A multi-omics databasing effort☆128Updated last week
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Updated 5 years ago
- HyPhy: Hypothesis testing using Phylogenies☆247Updated last week