stamatak / ExaML
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
☆49Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for ExaML
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- GATB Minia assembly pipeline☆29Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated last week
- Error correction for Illumina RNA-seq reads☆63Updated 8 months ago
- ☆53Updated last year
- Code for nanopore paper☆33Updated 9 years ago
- MIRA sequence assembler☆27Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- ☆27Updated 4 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆62Updated 11 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆46Updated 5 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆54Updated 6 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆45Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 5 years ago
- Ancient microbiome snakemake workflow☆21Updated 4 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago