najoshi / sickleLinks
Windowed Adaptive Trimming for fastq files using quality
☆226Updated 8 years ago
Alternatives and similar repositories for sickle
Users that are interested in sickle are comparing it to the libraries listed below
Sorting:
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- FASTA/FASTQ pre-processing programs☆193Updated 3 years ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆254Updated 5 months ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- TransDecoder source☆301Updated 3 months ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated 2 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆218Updated last month
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 4 months ago
- GFF and GTF file manipulation and interconversion☆311Updated last year
- Next generation sequencing reads de novo assembler.☆239Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- An overview of all nanopack tools☆273Updated 2 years ago
- PAired-eND Assembler for DNA sequences☆137Updated 5 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- A tool to circularize genome assemblies☆249Updated last year
- GFF and GVF specification documents☆216Updated last year
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆118Updated 2 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆242Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆373Updated 3 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- ☆297Updated 2 weeks ago