najoshi / sickle
Windowed Adaptive Trimming for fastq files using quality
☆219Updated 7 years ago
Related projects: ⓘ
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆208Updated 3 years ago
- Read trimming tool for Illumina NGS data.☆127Updated 9 years ago
- Genome Assembly and Annotation Service code☆199Updated 9 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆239Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆249Updated 2 months ago
- FASTA/FASTQ pre-processing programs☆163Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆257Updated 11 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆152Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆340Updated 2 years ago
- Count bases in BAM/CRAM files☆298Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆304Updated 3 months ago
- Convert various sequence formats to FASTA☆126Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆135Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆123Updated 2 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆240Updated last month
- Full-Length Alternative Isoform analysis of RNA☆207Updated last week
- ☆215Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆199Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆276Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆192Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆219Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆142Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆187Updated 2 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆111Updated 3 years ago
- 3D de novo assembly (3D DNA) pipeline☆203Updated 9 months ago
- ☆184Updated last month
- adapter trimmer for Oxford Nanopore reads☆331Updated 4 months ago
- Bacterial ribosomal RNA predictor☆218Updated last year
- Eukaryotic Genome Annotation Pipeline☆317Updated last month
- TransDecoder source☆267Updated 5 months ago