jeetsukumaran / DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
☆210Updated last month
Related projects ⓘ
Alternatives and complementary repositories for DendroPy
- HyPhy: Hypothesis testing using Phylogenies☆222Updated this week
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆228Updated this week
- GFF and GTF file manipulation and interconversion☆289Updated 7 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆149Updated 3 weeks ago
- Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files☆124Updated 2 years ago
- A Python package for exploring and analysing genetic variation data☆288Updated 3 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆324Updated 2 years ago
- Python library to simulate evolutionary sequence data☆78Updated 2 years ago
- ☆331Updated 4 months ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆177Updated last month
- RAxML Next Generation: faster, easier-to-use and more flexible☆398Updated this week
- Processing pipeline for pan-genome visulization and exploration☆134Updated last year
- An imagemagick-like frontend to Biopython SeqIO☆113Updated 8 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆94Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆110Updated last week
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆248Updated this week
- A tool to circularize genome assemblies☆233Updated 7 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆368Updated 11 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆192Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆530Updated 4 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆377Updated last month
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆178Updated 9 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆205Updated 4 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆294Updated last year
- Bacterial ribosomal RNA predictor☆227Updated last year
- Genome annotation with AUGUSTUS☆290Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆287Updated this week
- Program for aligning DNA sequences, a pairwise aligner.☆200Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆231Updated 2 weeks ago
- General tools for genomic analyses.☆343Updated 4 months ago