jeetsukumaran / DendroPyLinks
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
☆216Updated last week
Alternatives and similar repositories for DendroPy
Users that are interested in DendroPy are comparing it to the libraries listed below
Sorting:
- ☆341Updated 3 months ago
- Python library to simulate evolutionary sequence data☆79Updated 3 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆242Updated 2 weeks ago
- Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files☆127Updated 3 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆428Updated last week
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆185Updated 2 weeks ago
- HyPhy: Hypothesis testing using Phylogenies☆232Updated last week
- Tutorials on phylogenetic and phylogenomic inference☆386Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆162Updated last week
- Bacterial ribosomal RNA predictor☆246Updated last year
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆105Updated 2 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆288Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆160Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- An imagemagick-like frontend to Biopython SeqIO☆115Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆214Updated last month
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆91Updated 9 months ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆310Updated 4 months ago
- Accurate Species TRee ALgorithm☆262Updated last year
- Rapid comparison and dereplication of genomes☆299Updated 2 weeks ago
- GFF and GTF file manipulation and interconversion☆301Updated last year
- A user-friendly workflow for phylogenomics☆213Updated 2 weeks ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆286Updated 2 years ago
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆135Updated 3 months ago
- Simulate genealogical trees and genomic sequence data using population genetic models☆193Updated last month
- Efficient phylogenomic software by maximum likelihood☆202Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- A tool to circularize genome assemblies☆242Updated last year
- Fast genome and metagenome distance estimation using MinHash☆411Updated last year