Alternatives and similar repositories for DendroPy:

Users that are interested in DendroPy are comparing it to the libraries listed below

• stamatak / standard-RAxML
  ☆337Updated 2 weeks ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆384Updated this week
• biologyguy / BuddySuite
  Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
  ☆127Updated 3 years ago
• amkozlov / raxml-ng
  RAxML Next Generation: faster, easier-to-use and more flexible
  ☆411Updated 3 weeks ago
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆78Updated 3 years ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆377Updated last year
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆230Updated this week
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆296Updated 3 weeks ago
• iqtree / iqtree2
  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
  ☆274Updated this week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆317Updated 2 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆238Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆99Updated this week
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆237Updated this week
• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆245Updated this week
• stephaneguindon / phyml
  PhyML -- Phylogenetic estimation using (Maximum) Likelihood
  ☆182Updated last month
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆159Updated last week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆338Updated 2 weeks ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆216Updated 3 weeks ago
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆297Updated 2 months ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated 2 weeks ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆354Updated 2 years ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆138Updated last year
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆198Updated 7 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆185Updated last year
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆398Updated last year
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆116Updated last year
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆377Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆246Updated last week
• AliView / AliView
  Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
  ☆128Updated last week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆317Updated 9 months ago