jeetsukumaran / DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
☆215Updated last month
Alternatives and similar repositories for DendroPy:
Users that are interested in DendroPy are comparing it to the libraries listed below
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆240Updated last month
- Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files☆127Updated 3 years ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆281Updated this week
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆101Updated last week
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆161Updated 2 weeks ago
- Bacterial ribosomal RNA predictor☆241Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆201Updated 8 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆399Updated last year
- ☆339Updated last month
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- An imagemagick-like frontend to Biopython SeqIO☆115Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆416Updated last week
- A Python package for exploring and analysing genetic variation data☆296Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆283Updated last week
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- HyPhy: Hypothesis testing using Phylogenies☆230Updated last week
- GFF and GTF file manipulation and interconversion☆299Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated last month
- PASTA (Practical Alignment using SATe and Transitivity)☆89Updated 8 months ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆271Updated this week
- Eukaryotic Genome Annotation Pipeline☆345Updated last month
- A tool to circularize genome assemblies☆240Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆386Updated last month
- A user-friendly workflow for phylogenomics☆210Updated this week
- Rapid large-scale prokaryote pan genome analysis☆342Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆380Updated last year
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆181Updated this week
- An updated pipeline for pangenome investigation☆295Updated last month
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆203Updated this week
- Synteny and Rearrangement Identifier☆376Updated this week