Alternatives and similar repositories for DendroPy:

Users that are interested in DendroPy are comparing it to the libraries listed below

• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆294Updated 2 weeks ago
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆235Updated last month
• biologyguy / BuddySuite
  Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
  ☆127Updated 3 years ago
• amkozlov / raxml-ng
  RAxML Next Generation: faster, easier-to-use and more flexible
  ☆408Updated this week
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆371Updated last year
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆381Updated last month
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆234Updated last year
• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆245Updated last month
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆97Updated 4 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆236Updated 10 months ago
• iqtree / iqtree2
  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
  ☆267Updated this week
• smirarab / ASTRAL
  Accurate Species TRee ALgorithm
  ☆251Updated 10 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆137Updated last year
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆305Updated last year
• stamatak / standard-RAxML
  ☆334Updated 6 months ago
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆202Updated last month
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆111Updated last month
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆228Updated this week
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆217Updated 2 years ago
• mothur / mothur
  Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…
  ☆271Updated last month
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆78Updated 3 years ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆275Updated 2 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆332Updated 2 years ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆327Updated 3 weeks ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆302Updated 6 months ago
• smirarab / sepp
  Ensemble of HMM methods (SEPP, TIPP, UPP)
  ☆90Updated 5 months ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆206Updated this week
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆115Updated 3 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆356Updated 6 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆182Updated last year