Bayesian Evolutionary Analysis Sampling Trees
☆245Jun 5, 2026Updated this week
Alternatives and similar repositories for beast-mcmc
Users that are interested in beast-mcmc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Evolutionary Analysis by Sampling Trees☆276Mar 27, 2026Updated 2 months ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆146Updated this week
- Posterior summarisation in Bayesian phylogenetics☆73Sep 27, 2025Updated 8 months ago
- Automatically exported from code.google.com/p/figtree☆472May 17, 2026Updated 3 weeks ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆252Updated this week
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆27Sep 3, 2025Updated 9 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 2 months ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆196May 28, 2026Updated 2 weeks ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆15May 15, 2025Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆348Mar 4, 2025Updated last year
- R We There Yet?☆33Mar 27, 2025Updated last year
- ☆10Dec 20, 2022Updated 3 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆466May 29, 2026Updated last week
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆61Nov 14, 2018Updated 7 years ago
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆51Oct 2, 2024Updated last year
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- IQ-TREE version 3: software for phylogenetics☆141May 26, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆269Jan 9, 2026Updated 5 months ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆21May 8, 2026Updated last month
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆123Jun 2, 2026Updated last week
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆23Aug 15, 2025Updated 9 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- Main development repository for SpreadGL☆22Sep 30, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- ☆232May 10, 2026Updated last month
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆113May 26, 2026Updated 2 weeks ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆50Updated this week
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- HyPhy: Hypothesis testing using Phylogenies☆264Jun 4, 2026Updated last week
- Visualization and annotation of phylogenetic trees☆926Apr 29, 2026Updated last month