Alternatives and similar repositories for beast-mcmc:

Users that are interested in beast-mcmc are comparing it to the libraries listed below

• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆247Updated this week
• mothur / mothur
  Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…
  ☆271Updated this week
• beagle-dev / beagle-lib
  general purpose library for evaluating the likelihood of sequence evolution on trees
  ☆134Updated this week
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆121Updated 3 months ago
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆240Updated last month
• stamatak / standard-RAxML
  ☆339Updated last month
• revbayes / revbayes.archive
  ☆68Updated last year
• NBISweden / MrBayes
  MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…
  ☆242Updated last week
• zdk123 / SpiecEasi
  Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
  ☆209Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆101Updated last week
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆185Updated 2 weeks ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆241Updated last year
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆135Updated 2 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆135Updated last year
• stephaneguindon / phyml
  PhyML -- Phylogenetic estimation using (Maximum) Likelihood
  ☆181Updated this week
• MesquiteProject / MesquiteCore
  The core Mesquite repository
  ☆101Updated this week
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆222Updated 2 years ago
• jodyphelan / genomics_course
  ☆11Updated last month
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆281Updated this week
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆308Updated last year
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆79Updated 3 years ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆82Updated 2 years ago
• ANGSD / angsd
  Program for analysing NGS data.
  ☆236Updated last month
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆403Updated last year
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• biocore / emp
  Code repository of the Earth Microbiome Project.
  ☆162Updated 2 years ago
• Cibiv / IQ-TREE
  Efficient phylogenomic software by maximum likelihood
  ☆195Updated 3 years ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆342Updated 3 years ago
• FePhyFoFum / phyx
  phylogenetics tools for linux (and other mostly posix compliant) computers
  ☆119Updated 3 months ago
• ddarriba / modeltest
  Best-fit model selection
  ☆80Updated last year