Alternatives and similar repositories for beast-mcmc

Users that are interested in beast-mcmc are comparing it to the libraries listed below

• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆258Updated 2 months ago
• beagle-dev / beagle-lib
  general purpose library for evaluating the likelihood of sequence evolution on trees
  ☆139Updated 2 weeks ago
• NBISweden / MrBayes
  MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…
  ☆252Updated 6 months ago
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆247Updated this week
• mothur / mothur
  Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…
  ☆273Updated last week
• Cibiv / IQ-TREE
  Efficient phylogenomic software by maximum likelihood
  ☆203Updated 3 years ago
• mfumagalli / ngsTools
  Programs to analyse NGS data for population genetics purposes
  ☆177Updated last year
• biocore / emp
  Code repository of the Earth Microbiome Project.
  ☆163Updated 2 years ago
• tskit-dev / msprime
  Simulate genealogical trees and genomic sequence data using population genetic models
  ☆201Updated last month
• beast-dev / tracer
  Posterior summarisation in Bayesian phylogenetics
  ☆65Updated last month
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆206Updated 2 months ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆91Updated 2 months ago
• rajanil / fastStructure
  A variational framework for inferring population structure from SNP genotype data.
  ☆143Updated 2 years ago
• zdk123 / SpiecEasi
  Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
  ☆217Updated this week
• popsim-consortium / stdpopsim
  A library of standard population genetic models
  ☆137Updated this week
• stamatak / standard-RAxML
  ☆346Updated 7 months ago
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆81Updated 4 years ago
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆243Updated this week
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• DerrickWood / kraken
  Kraken taxonomic sequence classification system
  ☆217Updated 4 years ago
• MesserLab / SLiM
  SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…
  ☆196Updated this week
• ANGSD / angsd
  Program for analysing NGS data.
  ☆247Updated 7 months ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆165Updated last month
• FePhyFoFum / phyx
  phylogenetics tools for linux (and other mostly posix compliant) computers
  ☆122Updated 9 months ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆390Updated 2 years ago
• ddarriba / modeltest
  Best-fit model selection
  ☆85Updated last year
• stephaneguindon / phyml
  PhyML -- Phylogenetic estimation using (Maximum) Likelihood
  ☆193Updated last month
• revbayes / revbayes.archive
  ☆68Updated 2 years ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆319Updated 2 years ago
• biocore / qiime
  Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
  ☆285Updated 2 years ago