beast-dev / beast-mcmcLinks
Bayesian Evolutionary Analysis Sampling Trees
☆226Updated this week
Alternatives and similar repositories for beast-mcmc
Users that are interested in beast-mcmc are comparing it to the libraries listed below
Sorting:
- Bayesian Evolutionary Analysis by Sampling Trees☆254Updated 2 months ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆249Updated 4 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆244Updated this week
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆273Updated 3 weeks ago
- Code repository of the Earth Microbiome Project.☆163Updated 2 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆135Updated last week
- Efficient phylogenomic software by maximum likelihood☆202Updated 3 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆200Updated this week
- Programs to analyse NGS data for population genetics purposes☆175Updated last year
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Updated last week
- Posterior summarisation in Bayesian phylogenetics☆65Updated 3 months ago
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- A user-friendly workflow for phylogenomics☆219Updated 3 weeks ago
- ☆12Updated 5 months ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Updated 5 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆121Updated 7 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆108Updated 2 weeks ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆434Updated 2 weeks ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆34Updated this week
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆213Updated last month
- Kraken taxonomic sequence classification system☆217Updated 3 years ago
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆138Updated 5 months ago
- ☆345Updated 5 months ago
- HyPhy: Hypothesis testing using Phylogenies☆239Updated last week
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆188Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆162Updated 2 years ago
- Simulate genealogical trees and genomic sequence data using population genetic models☆197Updated this week
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆190Updated last month
- Program for analysing NGS data.☆242Updated 5 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆319Updated 6 months ago