Posterior summarisation in Bayesian phylogenetics
☆68Sep 27, 2025Updated 5 months ago
Alternatives and similar repositories for tracer
Users that are interested in tracer are comparing it to the libraries listed below
Sorting:
- Bayesian Evolutionary Analysis by Sampling Trees☆267Jan 22, 2026Updated last month
- general purpose library for evaluating the likelihood of sequence evolution on trees☆143Feb 10, 2026Updated 2 weeks ago
- Bayesian Evolutionary Analysis Sampling Trees☆235Updated this week
- ☆20Jun 15, 2024Updated last year
- R We There Yet?☆32Mar 27, 2025Updated 11 months ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆257Jan 9, 2026Updated last month
- Automatically exported from code.google.com/p/figtree☆457Jun 25, 2025Updated 8 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Jan 3, 2026Updated last month
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆79Updated this week
- Taxonomy-aware DNA sequence processing toolkit☆33Updated this week
- A new graphical interface for RAxML☆23Feb 19, 2026Updated last week
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 7 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 4 years ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 6 years ago
- ☆12May 12, 2019Updated 6 years ago
- SRAToolkit has been REPLACED - see README☆38Aug 29, 2016Updated 9 years ago
- Quality control for phylogenetic analyses☆13Updated this week
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Feb 12, 2026Updated 2 weeks ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆135Nov 6, 2024Updated last year
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 2 years ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆16Feb 16, 2026Updated last week
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Jun 12, 2024Updated last year
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆47Apr 28, 2025Updated 10 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- Automatically exported from code.google.com/p/prank-msa☆32Nov 17, 2025Updated 3 months ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆231Jan 8, 2026Updated last month
- ☆29Apr 18, 2023Updated 2 years ago
- ☆68Oct 17, 2023Updated 2 years ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago