beast-dev / tracer

Related projects ⓘ

Alternatives and complementary repositories for tracer

• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated last month
• nt246 / lcwgs-guide-tutorial
  ☆76Updated 3 years ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆87Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆108Updated 6 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 3 weeks ago
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆61Updated 3 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆84Updated 2 years ago
• ddarriba / modeltest
  Best-fit model selection
  ☆77Updated 8 months ago
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆75Updated 9 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆104Updated 2 years ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆34Updated 6 months ago
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆92Updated this week
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 3 months ago
• stschiff / msmc2
  ☆53Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆71Updated 3 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆105Updated 4 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆63Updated 11 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆92Updated 7 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆52Updated 6 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆68Updated 3 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆86Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 4 months ago
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆75Updated 3 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆32Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆21Updated this week
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆78Updated 2 years ago