beast-dev / tracerLinks
Posterior summarisation in Bayesian phylogenetics
☆66Updated 2 months ago
Alternatives and similar repositories for tracer
Users that are interested in tracer are comparing it to the libraries listed below
Sorting:
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆69Updated 4 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- software for UCE (and general) phylogenomics☆86Updated 2 weeks ago
- Implementation of the multiple sequential markovian coalescent☆89Updated 4 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Updated this week
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆90Updated last year
- a bash pipeline for RAD sequencing☆55Updated 10 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆87Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83Updated 2 years ago
- shell tools for processing phylogenetic trees☆115Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Best-fit model selection☆85Updated last year
- A library for running k-mers based GWAS☆122Updated last year
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- A variational framework for inferring population structure from SNP genotype data.☆142Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 10 months ago
- ☆65Updated 3 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆76Updated this week
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year