gjospin / PhyloSift
Phylogenetic and taxonomic analysis for genomes and metagenomes
☆82Updated 8 years ago
Alternatives and similar repositories for PhyloSift:
Users that are interested in PhyloSift are comparing it to the libraries listed below
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- ☆79Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- IS mapping software☆53Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 6 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- ☆52Updated 3 years ago
- GraftM - Rapid community profiles from metagenomes☆44Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- ☆48Updated 10 months ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- StaG Metagenomic Workflow Collaboration☆29Updated 5 months ago
- ☆36Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆42Updated this week
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- Gene-flank analysis tool☆27Updated last month
- ☆24Updated 6 years ago
- Synteny Imager☆60Updated 5 months ago