Phylogenetic and taxonomic analysis for genomes and metagenomes
☆82Feb 17, 2016Updated 10 years ago
Alternatives and similar repositories for PhyloSift
Users that are interested in PhyloSift are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- Phylogenetic placement and downstream analysis☆95Jan 28, 2026Updated 6 months ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 2 months ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- ☆53May 11, 2021Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 13 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jul 17, 2026Updated last week
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 4 months ago
- ☆15Aug 28, 2014Updated 11 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.☆35Jul 30, 2019Updated 6 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆135Oct 6, 2023Updated 2 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An analysis and visualization platform for 'omics data☆533Updated this week
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS☆10Oct 31, 2018Updated 7 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆68Jul 26, 2017Updated 9 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Fast genome-wide functional annotation through orthology assignment☆758May 22, 2026Updated 2 months ago