MesquiteProject / MesquiteCore

Related projects: ⓘ

• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆223Updated this week
• husonlab / megan-ce
  MEGAN Community Edition
  ☆65Updated 2 months ago
• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆236Updated this week
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆74Updated 2 years ago
• ddarriba / modeltest
  Best-fit model selection
  ☆73Updated 6 months ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆106Updated last month
• AliView / AliView
  Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
  ☆113Updated last year
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆60Updated 3 years ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆141Updated last week
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆72Updated 7 months ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆116Updated 6 months ago
• rajanil / fastStructure
  A variational framework for inferring population structure from SNP genotype data.
  ☆132Updated last year
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• stephaneguindon / phyml
  PhyML -- Phylogenetic estimation using (Maximum) Likelihood
  ☆175Updated last week
• faircloth-lab / phyluce
  software for UCE (and general) phylogenomics
  ☆77Updated 2 weeks ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆145Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆93Updated 3 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆218Updated last year
• beast-dev / tracer
  Posterior summarisation in Bayesian phylogenetics
  ☆52Updated 3 weeks ago
• FePhyFoFum / phyx
  phylogenetics tools for linux (and other mostly posix compliant) computers
  ☆111Updated 3 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆108Updated last week
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆89Updated last month
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆126Updated 2 years ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆142Updated last month
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆105Updated 4 months ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆63Updated last year
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆103Updated 4 months ago
• beast-dev / beast-mcmc
  Bayesian Evolutionary Analysis Sampling Trees
  ☆188Updated this week
• biocore / emp
  Code repository of the Earth Microbiome Project.
  ☆154Updated last year
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆77Updated 2 years ago