Alternatives and similar repositories for MesquiteCore:

Users that are interested in MesquiteCore are comparing it to the libraries listed below

• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆77Updated 3 years ago
• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆245Updated this week
• rajanil / fastStructure
  A variational framework for inferring population structure from SNP genotype data.
  ☆136Updated 2 years ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆80Updated 2 years ago
• bokulich-lab / RESCRIPt
  REference Sequence annotation and CuRatIon Pipeline
  ☆95Updated this week
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆65Updated 3 years ago
• AliView / AliView
  Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
  ☆120Updated 3 months ago
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆92Updated last month
• beast-dev / tracer
  Posterior summarisation in Bayesian phylogenetics
  ☆57Updated 4 months ago
• ddarriba / modeltest
  Best-fit model selection
  ☆79Updated 9 months ago
• smirarab / pasta
  PASTA (Practical Alignment using SATe and Transitivity)
  ☆87Updated 5 months ago
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆92Updated 5 months ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆90Updated 2 years ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆119Updated 10 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆115Updated last week
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆110Updated last week
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated 10 months ago
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆78Updated 11 months ago
• FePhyFoFum / phyx
  phylogenetics tools for linux (and other mostly posix compliant) computers
  ☆117Updated this week
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆150Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆111Updated 7 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆128Updated 10 months ago
• abacus-gene / paml
  PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…
  ☆137Updated last month
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆55Updated 4 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆63Updated last year
• beast-dev / beast-mcmc
  Bayesian Evolutionary Analysis Sampling Trees
  ☆198Updated this week
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆81Updated 6 years ago
• stephaneguindon / phyml
  PhyML -- Phylogenetic estimation using (Maximum) Likelihood
  ☆180Updated 3 weeks ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆114Updated 4 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆233Updated 9 months ago