Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks
☆47Apr 28, 2025Updated 10 months ago
Alternatives and similar repositories for dendroscope3
Users that are interested in dendroscope3 are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Aug 11, 2025Updated 6 months ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 7 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- The core Mesquite repository☆111Feb 11, 2026Updated 2 weeks ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆16Feb 16, 2026Updated 2 weeks ago
- Taxonomy-aware DNA sequence processing toolkit☆33Feb 23, 2026Updated last week
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆171Feb 17, 2026Updated last week
- Interface to Open Tree of Life API☆46Jan 16, 2026Updated last month
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- An imagemagick-like frontend to Biopython SeqIO☆117Mar 18, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 5 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated last week
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 3 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 10, 2025Updated 9 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research☆37Feb 4, 2026Updated 3 weeks ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆121Aug 21, 2023Updated 2 years ago
- Best-fit model selection☆87Mar 21, 2024Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 2 years ago
- ☆21Mar 19, 2025Updated 11 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- Posterior summarisation in Bayesian phylogenetics☆68Sep 27, 2025Updated 5 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Reconstruct Ancestral State in Phylogenies☆27May 21, 2024Updated last year
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Efficient phylogenomic software by maximum likelihood☆204Nov 4, 2021Updated 4 years ago
- A Full Featured Multiple Sequence Alignment Editor.☆26May 21, 2018Updated 7 years ago