husonlab / dendroscope3Links
Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks
☆47Updated 8 months ago
Alternatives and similar repositories for dendroscope3
Users that are interested in dendroscope3 are comparing it to the libraries listed below
Sorting:
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 2 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Updated last year
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 6 months ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A library for working with phylogenetic and population genetic data.☆65Updated 2 months ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated 2 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Reconstruction of transmission trees using genomic data☆70Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- Sequence simulator☆54Updated 11 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 3 weeks ago
- For distributing patric related code☆27Updated 3 years ago
- rhierbaps: R implementation of hierBAPS☆36Updated 4 years ago
- Fungal Genome Mapping Pipeline☆18Updated 6 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- map Illumina metagenomes to genomes!☆38Updated 3 weeks ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- ☆23Updated 6 years ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 9 months ago
- ☆67Updated 9 years ago
- k-mer counting software☆39Updated 3 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆70Updated 4 years ago