☆30Oct 14, 2022Updated 3 years ago
Alternatives and similar repositories for SpaceMix
Users that are interested in SpaceMix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 18, 2023Updated 2 years ago
- method for modeling continuous and discrete population genetic structure☆38Jan 8, 2024Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- An R Package to build and simulate coalescent models☆20Mar 16, 2026Updated last week
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Code and binaries related to processing haplotagging data☆15Mar 14, 2022Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Aug 29, 2017Updated 8 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Jun 24, 2024Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- the hierfstat package☆25Nov 20, 2024Updated last year
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 4, 2026Updated 2 weeks ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- microhaplotype visualizer and analyzer☆20Jun 24, 2021Updated 4 years ago
- ☆12Sep 11, 2025Updated 6 months ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- VCF-kit: Assorted utilities for the variant call format☆133Jul 10, 2025Updated 8 months ago