Alternatives and similar repositories for PolygenicAdaptationCode:

Users that are interested in PolygenicAdaptationCode are comparing it to the libraries listed below

• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 10 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• CshlSiepelLab / arg-selection
  ARG-based inference of selection using deep learning
  ☆18Updated last year
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated last year
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 5 months ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated last year
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 7 months ago
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 4 years ago
• mathii / gdc
  Short scripts for converting genetic data between formats.
  ☆29Updated 2 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆28Updated 3 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 2 months ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated last month
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago