bcm-uga / lfmmLinks
Fitting latent factor mixed models
☆13Updated 5 years ago
Alternatives and similar repositories for lfmm
Users that are interested in lfmm are comparing it to the libraries listed below
Sorting:
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated this week
- Module for analysing admixture graphs☆28Updated 7 years ago
- ☆20Updated 4 years ago
- ☆30Updated last month
- Perform GWAS using the FarmCPU model.☆23Updated 7 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 3 months ago
- A package for population structure inference from RAD-seq data☆32Updated 4 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆41Updated 9 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- A coalsecent simulator with selection☆20Updated 4 years ago
- ☆43Updated 3 months ago
- https://filippob.github.io/introduction_to_gwas/☆20Updated 2 weeks ago
- GWAS software that can handle autopolyploids☆28Updated 9 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- R package for pedigree inference based on SNP data☆26Updated last year
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 3 months ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 5 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- ☆11Updated 5 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated 3 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- QTL mapping with binmap data☆18Updated 6 years ago
- ☆17Updated 9 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆29Updated 6 years ago
- An R package to detect selection in biological pathways☆14Updated last year
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 2 weeks ago