bcm-uga / lfmm
Fitting latent factor mixed models
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for lfmm
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- ☆11Updated 5 years ago
- ☆28Updated this week
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆35Updated 10 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- An R package to detect selection in biological pathways☆14Updated 9 months ago
- ☆20Updated 4 years ago
- Perform GWAS using the FarmCPU model.☆21Updated 2 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 7 months ago
- QTL mapping in outcrossing species using CIM☆9Updated 9 months ago
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago
- Process MS results in R, in a tidy way☆17Updated 6 years ago
- https://filippob.github.io/introduction_to_gwas/☆17Updated 4 months ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆27Updated 10 months ago
- Handy genetics-related R scripts☆29Updated 4 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated last month
- R package for pedigree inference based on SNP data☆26Updated 4 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- An R package to help in plotting PCA results nicely.☆13Updated 4 years ago
- Perform GWAS with gemma in a simple pipeline☆24Updated 2 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆53Updated last week
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆23Updated 5 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆42Updated last month
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Sampling and inference of genealogies with recombination☆24Updated last month