☆18Dec 3, 2024Updated last year
Alternatives and similar repositories for aDNA_imputation
Users that are interested in aDNA_imputation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆27Oct 29, 2020Updated 5 years ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 4 months ago
- ☆15May 30, 2024Updated 2 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆23Dec 12, 2025Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆17Oct 7, 2024Updated last year
- Software for ancestry estimation in unrelated individuals☆25Jan 31, 2026Updated 5 months ago
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 6 years ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Jul 17, 2026Updated last week
- ☆53May 12, 2026Updated 2 months ago
- Time-stratified f-statistics☆17Aug 1, 2025Updated 11 months ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆30Aug 15, 2025Updated 11 months ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Introduction to Ancient Metagenomics Book☆16Jul 8, 2026Updated 2 weeks ago
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 4 months ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆17Aug 6, 2024Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆46Jul 27, 2023Updated 2 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated last year
- Bioinformatics with R cookbook☆14Apr 3, 2019Updated 7 years ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆16Apr 22, 2026Updated 3 months ago
- Software for estimating genome-wide genealogies for thousands of samples☆44May 19, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jul 10, 2026Updated 2 weeks ago
- Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis☆15Apr 24, 2019Updated 7 years ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- A post-mapping authentication toolkit for ancient metagenomics☆22Mar 30, 2026Updated 3 months ago
- A pipeline for the analysis of sedimentary ancient mtDNA.☆17Jun 18, 2026Updated last month
- ☆13May 13, 2024Updated 2 years ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- ☆27Mar 26, 2024Updated 2 years ago
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- faster haplotype-based admixture inference and dating software☆12Nov 25, 2025Updated 7 months ago
- An R interface for the ADMIXTOOLS software☆37Nov 24, 2025Updated 8 months ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- ☆14Jul 16, 2026Updated last week