andrej-fischer / EMuLinks
An Expectation-Maximization algorithm to infer mutational signatures
☆25Updated 8 years ago
Alternatives and similar repositories for EMu
Users that are interested in EMu are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- ☆23Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆11Updated 7 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ☆14Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 3 weeks ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago