Alternatives and similar repositories for EMu

Users that are interested in EMu are comparing it to the libraries listed below

• juliangehring / SomaticSignatures
  The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…
  ☆22Updated 5 years ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 4 months ago
• carjed / helmsman
  highly-efficient & lightweight mutation signature matrix aggregation
  ☆19Updated 3 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆34Updated 2 years ago
• shahcompbio / timescape
  Visualization tool for temporal clonal evolution.
  ☆17Updated 5 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆35Updated 7 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆38Updated 2 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 months ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated last week
• andrej-fischer / cloneHD
  High-definition reconstruction of clonal composition from next-generation sequencing data
  ☆40Updated 8 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• hammerlab / awesome-clonality
  A curated list of awesome clonality and tumor heterogeneity resources
  ☆15Updated 5 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 3 months ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated last month
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆27Updated 2 years ago
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆38Updated 4 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year