Alternatives and similar repositories for starbeast2

Users that are interested in starbeast2 are comparing it to the libraries listed below

• singhal / popgen_tutorial
  ☆11Updated 5 years ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 5 years ago
• bwringe / hybriddetective
  ☆14Updated 2 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆18Updated 4 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 months ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• russcd / SELAM
  Simulation of Epistasis Local adaptation, with Ancestry and Mate choice
  ☆11Updated 2 years ago
• rbouckaert / DensiTree
  Automatically exported from code.google.com/p/densitree
  ☆28Updated last month
• nkschaefer / sarge
  Heuristic, parsimony-based ancestral recombination graph inference
  ☆16Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆17Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 5 years ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆16Updated 4 months ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 6 months ago
• kelleyharris / Inferring-demography-from-IBS
  A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)
  ☆15Updated 12 years ago
• fgvieira / ngsF
  Estimation of per-individual inbreeding coefficients under a probabilistic framework
  ☆19Updated 2 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆32Updated 2 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 2 months ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated 10 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆15Updated 3 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 5 years ago