genomescale / starbeast2
Faster multispecies coalescent inference using multilocus data
☆13Updated last year
Alternatives and similar repositories for starbeast2:
Users that are interested in starbeast2 are comparing it to the libraries listed below
- ☆11Updated 5 years ago
- ☆14Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆25Updated last week
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- Software for detecting introgression using supervised machine learning☆20Updated 2 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆16Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated 2 weeks ago
- The MafFilter genome alignment processor☆18Updated last month
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- A box of genomics tools☆21Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ☆17Updated 9 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆10Updated 4 years ago
- ☆18Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 6 months ago
- ☆20Updated 6 months ago
- General purpose population genetics software☆13Updated 5 years ago