Alternatives and similar repositories for starbeast2

Users that are interested in starbeast2 are comparing it to the libraries listed below

• singhal / popgen_tutorial
  ☆11Updated 6 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆19Updated 5 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• bwringe / hybriddetective
  ☆15Updated 2 years ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 6 years ago
• kelleyharris / Inferring-demography-from-IBS
  A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)
  ☆15Updated 12 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 10 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 7 years ago
• rbouckaert / DensiTree
  Automatically exported from code.google.com/p/densitree
  ☆29Updated 5 months ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated 2 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• fgvieira / ngsF
  Estimation of per-individual inbreeding coefficients under a probabilistic framework
  ☆20Updated 2 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆57Updated 6 months ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆17Updated 3 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆30Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• samebdon / heRho
  heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412
  ☆10Updated 4 months ago
• russcd / Ancestry_HMM
  ☆32Updated 3 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• chilleo / ALPHA
  A toolkit for automated local phylogenomic analyses, or ALPHA
  ☆13Updated 6 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆30Updated 2 years ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 10 months ago