Alternatives and similar repositories for Introgression-detection:

Users that are interested in Introgression-detection are comparing it to the libraries listed below

• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• Shuhua-Group / ArchaicSeeker2.0
  ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …
  ☆17Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 4 months ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• Popgen48 / scalepopgen
  ☆22Updated 10 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 10 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 3 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• zhangfumin / domestication
  ☆17Updated 2 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆20Updated 7 months ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated last month
• tsackton / linked-selection
  ☆24Updated 7 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆26Updated 6 months ago
• gwct / grampa
  Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
  ☆13Updated last week
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated this week
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆11Updated last year
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated last week
• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆20Updated 8 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆48Updated this week
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated 5 months ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆34Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆27Updated 3 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆16Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• NBISweden / GenErode
  GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples …
  ☆25Updated this week
• johnssproul / RepeatProfiler
  ☆24Updated 2 weeks ago