genomematt / xenomapperLinks
A utility for splitting mixed origin NGS reads
☆10Updated 4 years ago
Alternatives and similar repositories for xenomapper
Users that are interested in xenomapper are comparing it to the libraries listed below
Sorting:
- ☆18Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- reference free variant assembly☆34Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- blast, shmlast☆21Updated 5 years ago
- Identification of structural variations☆12Updated 3 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Updated 8 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 7 months ago
- Lossless VCF compression☆21Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- ☆18Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Ebola virus surveillance☆15Updated 9 years ago
- Northern Arizona SNP Pipeline☆20Updated last year
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- ☆11Updated 2 years ago