Alternatives and similar repositories for sprime

Users that are interested in sprime are comparing it to the libraries listed below

• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆32Updated 2 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆28Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆50Updated last week
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆18Updated 9 months ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆32Updated 4 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆30Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆14Updated 2 years ago
• Popgen48 / scalepopgen
  ☆26Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆53Updated 7 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆30Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Updated 6 years ago
• LauritsSkov / Introgression-detection
  ☆45Updated 3 months ago
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆35Updated 6 months ago
• lntran26 / donni
  machine learning applications for dadi
  ☆16Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• farhangus / Sniffles2_plot
  ☆32Updated last year
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆50Updated 7 months ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 6 months ago
• AI-sandbox / archetypal-analysis
  ☆15Updated 2 years ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 6 years ago
• stschiff / msmc2
  ☆66Updated 3 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago